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1.
Development ; 146(2)2019 01 23.
Article En | MEDLINE | ID: mdl-30630824

The enrichment of intermediate filaments in the apical cytoplasm of intestinal cells is evolutionarily conserved, forming a sheath that is anchored to apical junctions and positioned below the microvillar brush border, which suggests a protective intracellular barrier function. To test this, we used Caenorhabditiselegans, the intestinal cells of which are endowed with a particularly dense intermediate filament-rich layer that is referred to as the endotube. We found alterations in endotube structure and intermediate filament expression upon infection with nematicidal B.thuringiensis or treatment with its major pore-forming toxin crystal protein Cry5B. Endotube impairment due to defined genetic mutations of intermediate filaments and their regulators results in increased Cry5B sensitivity as evidenced by elevated larval arrest, prolonged time of larval development and reduced survival. Phenotype severity reflects the extent of endotube alterations and correlates with reduced rescue upon toxin removal. The results provide in vivo evidence for a major protective role of a properly configured intermediate filament network as an intracellular barrier in intestinal cells. This notion is further supported by increased sensitivity of endotube mutants to oxidative and osmotic stress.


Bacillus thuringiensis/physiology , Bacterial Proteins/toxicity , Caenorhabditis elegans/microbiology , Endotoxins/toxicity , Hemolysin Proteins/toxicity , Intermediate Filaments/metabolism , Intestines/microbiology , Intestines/pathology , Animals , Bacillus thuringiensis Toxins , Caenorhabditis elegans/genetics , Caenorhabditis elegans/growth & development , Caenorhabditis elegans/ultrastructure , Caenorhabditis elegans Proteins/metabolism , Immunity, Innate/drug effects , Immunity, Innate/genetics , Intermediate Filaments/drug effects , Intestines/drug effects , Larva/drug effects , Larva/ultrastructure , Mutation/genetics , Osmotic Pressure/drug effects , Oxidative Stress/drug effects , Protein Isoforms/metabolism , Transcription, Genetic/drug effects
2.
Mol Biol Cell ; 27(24): 3855-3868, 2016 12 01.
Article En | MEDLINE | ID: mdl-27733627

Intermediate filaments are major cytoskeletal components whose assembly into complex networks and isotype-specific functions are still largely unknown. Caenorhabditis elegans provides an excellent model system to study intermediate filament organization and function in vivo. Its intestinal intermediate filaments localize exclusively to the endotube, a circumferential sheet just below the actin-based terminal web. A genetic screen for defects in the organization of intermediate filaments identified a mutation in the catalytic domain of the MAP kinase 7 orthologue sma-5(kc1) In sma-5(kc1) mutants, pockets of lumen penetrate the cytoplasm of the intestinal cells. These membrane hernias increase over time without affecting epithelial integrity and polarity. A more pronounced phenotype was observed in the deletion allele sma-5(n678) and in intestine-specific sma-5(RNAi) Besides reduced body length, an increased time of development, reduced brood size, and reduced life span were observed in the mutants, indicating compromised food uptake. Ultrastructural analyses revealed that the luminal pockets include the subapical cytoskeleton and coincide with local thinning and gaps in the endotube that are often enlarged in other regions. Increased intermediate filament phosphorylation was detected by two-dimensional immunoblotting, suggesting that loss of SMA-5 function leads to reduced intestinal tube stability due to altered intermediate filament network phosphorylation.


Caenorhabditis elegans Proteins/genetics , Caenorhabditis elegans Proteins/metabolism , Actins/genetics , Animals , Caenorhabditis elegans/genetics , Cytoskeleton , Intermediate Filaments/metabolism , Intermediate Filaments/ultrastructure , Intestinal Mucosa/metabolism , Intestines/ultrastructure , Microtubules/physiology , Phenotype , Point Mutation/genetics
3.
BMC Biol ; 14: 66, 2016 08 09.
Article En | MEDLINE | ID: mdl-27506200

BACKGROUND: Affinity purification followed by mass spectrometry (AP/MS) is a widely used approach to identify protein interactions and complexes. In multicellular organisms, the accurate identification of protein complexes by AP/MS is complicated by the potential heterogeneity of complexes in different tissues. Here, we present an in vivo biotinylation-based approach for the tissue-specific purification of protein complexes from Caenorhabditis elegans. Tissue-specific biotinylation is achieved by the expression in select tissues of the bacterial biotin ligase BirA, which biotinylates proteins tagged with the Avi peptide. RESULTS: We generated N- and C-terminal tags combining GFP with the Avi peptide sequence, as well as four BirA driver lines expressing BirA ubiquitously and specifically in the seam and hyp7 epidermal cells, intestine, or neurons. We validated the ability of our approach to identify bona fide protein interactions by identifying the known LGL-1 interaction partners PAR-6 and PKC-3. Purification of the Discs large protein DLG-1 identified several candidate interaction partners, including the AAA-type ATPase ATAD-3 and the uncharacterized protein MAPH-1.1. We have identified the domains that mediate the DLG-1/ATAD-3 interaction, and show that this interaction contributes to C. elegans development. MAPH-1.1 co-purified specifically with DLG-1 purified from neurons, and shared limited homology with the microtubule-associated protein MAP1A, a known neuronal interaction partner of mammalian DLG4/PSD95. A CRISPR/Cas9-engineered GFP::MAPH-1.1 fusion was broadly expressed and co-localized with microtubules. CONCLUSIONS: The method we present here is able to purify protein complexes from specific tissues. We uncovered a series of DLG-1 interactors, and conclude that ATAD-3 is a biologically relevant interaction partner of DLG-1. Finally, we conclude that MAPH-1.1 is a microtubule-associated protein of the MAP1 family and a candidate neuron-specific interaction partner of DLG-1.


Caenorhabditis elegans Proteins/isolation & purification , Caenorhabditis elegans/metabolism , Guanylate Kinases/metabolism , Organ Specificity , Protein Interaction Mapping/methods , Amino Acid Sequence , Animals , Biotinylation , Caenorhabditis elegans Proteins/metabolism , Fluorescent Antibody Technique , Multiprotein Complexes/isolation & purification , Neurons/metabolism , Protein Binding , Protein Interaction Domains and Motifs , Protein Transport , Reproducibility of Results
4.
Methods Enzymol ; 568: 681-706, 2016.
Article En | MEDLINE | ID: mdl-26795489

It is commonly accepted that intermediate filaments have an important mechanical function. This function relies not only on intrinsic material properties but is also determined by dynamic interactions with other cytoskeletal filament systems, distinct cell adhesion sites, and cellular organelles which are fine-tuned by multiple signaling pathways. While aspects of these properties and processes can be studied in vitro, their full complexity can only be understood in a viable tissue context. Yet, suitable and easily accessible model systems for monitoring tissue mechanics at high precision are rare. We show that the dissected intestine of the genetic model organism Caenorhabditis elegans fulfills this requirement. The 20 intestinal cells, which are arranged in an invariant fashion, are characterized by a dense subapical mesh of intermediate filaments that are attached to the C. elegans apical junction. We present procedures to visualize details of the characteristic intermediate filament-junctional complex arrangement in living animals. We then report on methods to prepare intestines with a fully intact intermediate filament cytoskeleton and detail procedures to assess their viability. A dual micropipette assay is described to measure mechanical properties of the dissected intestine while monitoring the spatial arrangement of the intermediate filament system. Advantages of this approach are (i) the high reproducibility of measurements because of the uniform architecture of the intestine and (ii) the high degree of accessibility allowing not only mechanical manipulation of an intact tissue but also control of culture medium composition and addition of drugs as well as visualization of cell structures. With this method, examination of worms carrying mutations in the intermediate filament system, its interacting partners and its regulators will become feasible.


Caenorhabditis elegans/metabolism , Intermediate Filaments/metabolism , Intestinal Mucosa/metabolism , Animals
5.
Development ; 139(10): 1851-62, 2012 May.
Article En | MEDLINE | ID: mdl-22510987

The nematode Caenorhabditis elegans is an excellent model system in which to study in vivo organization and function of the intermediate filament (IF) system for epithelial development and function. Using a transgenic ifb-2::cfp reporter strain, a mutagenesis screen was performed to identify mutants with aberrant expression patterns of the IF protein IFB-2, which is expressed in a dense network at the subapical endotube just below the microvillar brush border of intestinal cells. Two of the isolated alleles (kc2 and kc3) were mapped to the same gene, which we refer to as ifo-1 (intestinal filament organizer). The encoded polypeptide colocalizes with IF proteins and F-actin in the intestine. The apical localization of IFO-1 does not rely on IFB-2 but is dependent on LET-413, a basolateral protein involved in apical junction assembly and maintenance of cell polarity. In mutant worms, IFB-2 and IFC-2 are mislocalized in cytoplasmic granules and accumulate in large aggregates at the C. elegans apical junction (CeAJ) in a DLG-1-dependent fashion. Electron microscopy reveals loss of the prominent endotube and disordered but still intact microvilli. Semiquantitative fluorescence microscopy revealed a significant decrease of F-actin, suggesting a general role of IFO-1 in cytoskeletal organization. Furthermore, downregulation of the cytoskeletal organizer ERM-1 and the adherens junction component DLG-1, each of which leads to F-actin reduction on its own, induces a novel synthetic phenotype in ifo-1 mutants resulting in disruption of the lumen. We conclude that IFO-1 is a multipurpose linker between different cytoskeletal components of the C. elegans intestinal terminal web and contributes to proper epithelial tube formation.


Caenorhabditis elegans Proteins/metabolism , Caenorhabditis elegans/metabolism , Cytoskeletal Proteins/metabolism , Guanylate Kinases/metabolism , Actins/genetics , Actins/metabolism , Animals , Caenorhabditis elegans/genetics , Caenorhabditis elegans Proteins/genetics , Cytoskeletal Proteins/genetics , Cytoskeleton/metabolism , Guanylate Kinases/genetics , Intermediate Filaments/genetics , Intermediate Filaments/metabolism
6.
Mitochondrion ; 12(3): 399-405, 2012 May.
Article En | MEDLINE | ID: mdl-22387847

The biogenesis of mitochondrial NADH:ubiquinone oxidoreductase (complex I) requires several assembly chaperones. These so-called complex I assembly factors have emerged as a new class of human disease genes. Here, we identified putative assembly factor homologues in Caenorhabditis elegans. We demonstrate that two candidates (C50B8.3/NUAF-1, homologue of NDUFAF1 and R07H5.3/NUAF-3, homologue of NDUFAF3) clearly affect complex I function. Assembly factor deficient worms were shorter, showed a diminished brood size and displayed reduced fat content. Our results suggest that mitochondrial complex I biogenesis is evolutionarily conserved. Moreover, Caenorhabditis elegans appears to be a promising model organism to study assembly factor related human diseases.


Caenorhabditis elegans Proteins/metabolism , Caenorhabditis elegans/metabolism , Electron Transport Complex I/metabolism , Mitochondria/metabolism , Mitochondrial Proteins/metabolism , Sequence Homology, Amino Acid , Animals , Caenorhabditis elegans/genetics , Caenorhabditis elegans Proteins/genetics , Electron Transport Complex I/genetics , Humans , Mitochondrial Proteins/genetics , NADH Dehydrogenase/genetics , NADH Dehydrogenase/metabolism , Organelle Biogenesis
7.
PLoS One ; 7(2): e32183, 2012.
Article En | MEDLINE | ID: mdl-22359667

The planar cell polarity (PCP) pathway is highly conserved from Drosophila to humans and a PCP-like pathway has recently been described in the nematode Caenorhabditis elegans. The developmental function of this pathway is to coordinate the orientation of cells or structures within the plane of an epithelium or to organize cell-cell intercalation required for correct morphogenesis. Here, we describe a novel role of VANG-1, the only C. elegans ortholog of the conserved PCP component Strabismus/Van Gogh. We show that two alleles of vang-1 and depletion of the protein by RNAi cause an increase of mean life span up to 40%. Consistent with the longevity phenotype vang-1 animals also show enhanced resistance to thermal- and oxidative stress and decreased lipofuscin accumulation. In addition, vang-1 mutants show defects like reduced brood size, decreased ovulation rate and prolonged reproductive span, which are also related to gerontogenes. The germline, but not the intestine or neurons, seems to be the primary site of vang-1 function. Life span extension in vang-1 mutants depends on the insulin/IGF-1-like receptor DAF-2 and DAF-16/FoxO transcription factor. RNAi against the phase II detoxification transcription factor SKN-1/Nrf2 also reduced vang-1 life span that might be explained by gradual inhibition of insulin/IGF-1-like signaling in vang-1. This is the first time that a key player of the PCP pathway is shown to be involved in the insulin/IGF-1-like signaling dependent modulation of life span in C. elegans.


Caenorhabditis elegans Proteins/physiology , Caenorhabditis elegans/metabolism , Insulin-Like Growth Factor I/metabolism , Insulin/metabolism , Longevity , Phosphoproteins/physiology , Signal Transduction , Animals , Caenorhabditis elegans/genetics , Caenorhabditis elegans Proteins/genetics , Cell Polarity , Forkhead Transcription Factors , Heat-Shock Response , Oxidative Stress , Phosphoproteins/genetics , RNA, Small Interfering/pharmacology , Receptor, Insulin , Transcription Factors
8.
Methods Cell Biol ; 107: 207-38, 2012.
Article En | MEDLINE | ID: mdl-22226525

Cell polarity is a fundamental principle guiding development. Early C. elegans embryos contain a diversity of polarized cell types, ranging from asymmetrically dividing stem cells to a polarized epithelium. Over the past two decades, work using C. elegans embryos has led to mechanistic understandings of many aspects of cell polarity establishment, maintenance and propagation. Here we provide basic methods for researchers interested in using C. elegans embryos to study cell polarity, emphasizing the amenability of C. elegans to quantitative molecular analysis.


Caenorhabditis elegans/ultrastructure , Fluorescent Antibody Technique/methods , Intestinal Mucosa/cytology , Microscopy, Fluorescence/methods , Stem Cells/ultrastructure , Animals , Animals, Genetically Modified , Biomarkers/metabolism , Caenorhabditis elegans/embryology , Caenorhabditis elegans/genetics , Caenorhabditis elegans Proteins/genetics , Caenorhabditis elegans Proteins/metabolism , Cell Polarity/genetics , Embryo, Nonmammalian , Fluorescent Dyes , Intestinal Mucosa/metabolism , Organelles/ultrastructure , RNA Interference , Single-Cell Analysis , Stem Cells/metabolism
9.
Exp Gerontol ; 47(3): 270-5, 2012 Mar.
Article En | MEDLINE | ID: mdl-22245785

Caenorhabditis elegans open reading frame T21C9.1 encodes an uncharacterized protein, which is here named MICS-1 (mitochondrial scaffolding protein-1). It is predicted to be the homolog of human outer mitochondrial membrane protein 25 (OMP25 or synaptojanin-2-binding protein), which is a PDZ domain containing protein with a putative role in cellular stress response pathways. Here, we provide evidence that MICS-1 is an interacting partner of mitochondrial protein ATAD-3 (homologue of human ATAD3), which is essential for C. elegans development. We demonstrate that mics-1(RNAi) animals or mics-1 mutants display enhanced longevity with an increased mean lifespan of up to 54% compared to control animals. Of note, also atad-3(RNAi) promoted longevity, although to a lesser extend (29% compared to controls). In addition, thermal stress of mics-1 mutants induced low reactive oxygen species (ROS) production, whereas atad-3(RNAi) animals were highly sensitive to this assay, displaying drastically increased ROS levels. Further studies revealed that MICS-1 and ATAD-3 associated longevity was partially dependent on the presence of DAF-16. However, for both conditions, we also found a DAF-16 independent extension of lifespan. Finally, we observed an additional lifespan extension in mics-1 mutants when subjected to atad-3(RNAi) whereas heat induced ROS production was even aggravated under this condition. This suggests (partially) independent effects of MICS-1 and ATAD-3 on lifespan and ROS production in vivo.


Caenorhabditis elegans Proteins/physiology , Caenorhabditis elegans/metabolism , Carrier Proteins/physiology , Longevity/physiology , Mitochondria/metabolism , Mitochondrial Proteins/physiology , Animals , Caenorhabditis elegans/genetics , Caenorhabditis elegans Proteins/genetics , Caenorhabditis elegans Proteins/metabolism , Carrier Proteins/genetics , Carrier Proteins/metabolism , Hot Temperature , Mitochondrial Proteins/genetics , Mitochondrial Proteins/metabolism , Mutation , Protein Binding/physiology , Reactive Oxygen Species/metabolism
10.
Anal Biochem ; 407(2): 287-9, 2010 Dec 15.
Article En | MEDLINE | ID: mdl-20705045

Blue native polyacrylamide gel electrophoresis (BN-PAGE) is an essential tool for investigating mitochondrial respiratory chain complexes. However, with current BN-PAGE protocols for Caenorhabditis elegans (C. elegans), large worm amounts and high quantities of mitochondrial protein are required to yield clear results. Here, we present an efficient approach to isolate mitochondrial complex I (NADH:ubiquinone oxidoreductase) from C. elegans, grown on agar plates. We demonstrate that considerably lower amounts of mitochondrial protein are sufficient to isolate complex I and to display clear in-gel activity results. Moreover, we present the first complex I assembly profile for C. elegans, obtained by two-dimensional BN/SDS-PAGE.


Caenorhabditis elegans Proteins/metabolism , Caenorhabditis elegans/metabolism , Electron Transport Complex I/metabolism , Electrophoresis, Polyacrylamide Gel/methods , Mitochondria/metabolism , Animals , Caenorhabditis elegans Proteins/chemistry , Caenorhabditis elegans Proteins/isolation & purification , Electron Transport Complex I/isolation & purification , NAD/chemistry , Oxidoreductases/chemistry
11.
Dev Biol ; 339(2): 268-79, 2010 Mar 15.
Article En | MEDLINE | ID: mdl-20004187

Understanding how epithelial organs form during morphogenesis is a major problem in developmental biology. In the present paper, we provide a detailed analysis of vang-1, the only homolog of the planar cell polarity protein Strabismus/Van Gogh in Caenorhabditis elegans. We demonstrate that during organogenesis of the intestine, (i) VANG-1 specifically interacts with PDZ 2 domain of DLG-1 (Discs large) and becomes phosphorylated by the kinase domain of the FGF-like receptor tyrosine kinase EGL-15; (ii) VANG-1 is predominantly restrained to the cell cortex but relocates to the apical junction; and (iii) in vang-1 embryos epithelial cells of the intestine are not correctly arranged along the anterior-posterior axis. To investigate what determines the disposition of the VANG-1 protein, either truncated protein forms were expressed in the intestine or RNAi was used to remove the functions of gene products previously shown to be involved in apical junction formation. Removal of the VANG-1 PDZ binding motif "-ESAV" and depletion of dlg-1 or let-413 gene functions interferes with the localization of VANG-1. In addition, egl-15 embryos show a premature relocation of VANG-1 to the apical junction, causing defects that resemble those observed in mutant vang-1 embryos and after intestine-specific overexpression of full-length vang-1. Finally, the localization of VANG-1 depends on DSH-2, a homolog of the planar cell polarity protein Dishevelled and depletion phenocopies vang-1 and egl-15 phenotypes in the embryonic intestine.


Caenorhabditis elegans Proteins/metabolism , Caenorhabditis elegans/embryology , Caenorhabditis elegans/metabolism , Phosphoproteins/metabolism , Receptors, Fibroblast Growth Factor/metabolism , Signal Transduction , Alleles , Animals , Body Patterning , Caenorhabditis elegans/genetics , Caenorhabditis elegans Proteins/genetics , Cell Cycle Proteins/genetics , Cell Cycle Proteins/metabolism , Cell Polarity/genetics , Dishevelled Proteins , Embryo, Nonmammalian/metabolism , Intestinal Mucosa/metabolism , Intestines/embryology , Phosphoproteins/genetics , Receptors, Fibroblast Growth Factor/genetics
12.
PLoS One ; 4(10): e7644, 2009 Oct 30.
Article En | MEDLINE | ID: mdl-19888333

BACKGROUND: Mammalian ATAD3 is a mitochondrial protein, which is thought to play an important role in nucleoid organization. However, its exact function is still unresolved. RESULTS: Here, we characterize the Caenorhabditis elegans (C. elegans) ATAD3 homologue (ATAD-3) and investigate its importance for mitochondrial function and development. We show that ATAD-3 is highly conserved among different species and RNA mediated interference against atad-3 causes severe defects, characterized by early larval arrest, gonadal dysfunction and embryonic lethality. Investigation of mitochondrial physiology revealed a disturbance in organellar structure while biogenesis and function, as indicated by complex I and citrate synthase activities, appeared to be unaltered according to the developmental stage. Nevertheless, we observed very low complex I and citrate synthase activities in L1 larvae populations in comparison to higher larval and adult stages. Our findings indicate that atad-3(RNAi) animals arrest at developmental stages with low mitochondrial activity. In addition, a reduced intestinal fat storage and low lysosomal content after depletion of ATAD-3 suggests a central role of this protein for metabolic activity. CONCLUSIONS: In summary, our data clearly indicate that ATAD-3 is essential for C. elegans development in vivo. Moreover, our results suggest that the protein is important for the upregulation of mitochondrial activity during the transition to higher larval stages.


Caenorhabditis elegans Proteins/physiology , Caenorhabditis elegans/genetics , Caenorhabditis elegans/physiology , DNA-Binding Proteins/physiology , Gene Expression Regulation, Developmental , Mitochondria/metabolism , Mitochondrial Proteins/physiology , ATPases Associated with Diverse Cellular Activities , Adenosine Triphosphatases , Amino Acid Sequence , Animals , Caenorhabditis elegans Proteins/genetics , Caenorhabditis elegans Proteins/metabolism , Cell Nucleus/metabolism , DNA-Binding Proteins/genetics , Genes, Helminth , Humans , Membrane Proteins , Mitochondrial Proteins/genetics , Models, Biological , Molecular Sequence Data , RNA Interference , RNA, Small Interfering/metabolism , Sequence Homology, Amino Acid
13.
PLoS One ; 4(8): e6622, 2009 Aug 12.
Article En | MEDLINE | ID: mdl-19672302

While expectations and applications of nanotechnologies grow exponentially, little is known about interactions of engineered nanoparticles with multicellular organisms. Here we propose the transparent roundworm Caenorhabditis elegans as a simple but anatomically and biologically well defined animal model that allows for whole organism analyses of nanoparticle-bio-interactions. Microscopic techniques showed that fluorescently labelled nanoparticles are efficiently taken up by the worms during feeding, and translocate to primary organs such as epithelial cells of the intestine, as well as secondary organs belonging to the reproductive tract. The life span of nanoparticle-fed Caenorhabditis elegans remained unchanged, whereas a reduction of progeny production was observed in silica-nanoparticle exposed worms versus untreated controls. This reduction was accompanied by a significant increase of the 'bag of worms' phenotype that is characterized by failed egg-laying and usually occurs in aged wild type worms. Experimental exclusion of developmental defects suggests that silica-nanoparticles induce an age-related degeneration of reproductive organs, and thus set a research platform for both, detailed elucidation of molecular mechanisms and high throughput screening of different nanomaterials by analyses of progeny production.


Caenorhabditis elegans/metabolism , Nanoparticles , Silicon Dioxide , Animals , Caenorhabditis elegans/cytology , Caenorhabditis elegans/physiology , Reproduction
14.
Cell Motil Cytoskeleton ; 66(10): 852-64, 2009 Oct.
Article En | MEDLINE | ID: mdl-19437512

Intermediate filaments (IFs) make up one of the three major fibrous cytoskeletal systems in metazoans. Numerous IF polypeptides are synthesized in cell type-specific combinations suggesting specialized functions. The review concentrates on IFs in the model organism Caenorhabditis elegans which carries great promise to elucidate the still unresolved mechanisms of IF assembly into complex networks and to determine IF function in a living organism. In contrast to Drosophila melanogaster, which lacks cytoplasmic IFs altogether, the nematode genome contains 11 genes coding for cytoplasmic IFs and only a single gene for a nuclear lamin. Its cytoplasmic IFs are expressed in developmentally and spatially defined patterns. As an example we present the case of the intestinal IFs which are abundant in the mechanically resilient endotube, a prominent feature of the C. elegans intestinal terminal web region. This IF-rich structure brings together all three cytoskeletal filaments that are integrated into a coherent entity by the C. elegans apical junction (CeAJ) thereby completely surrounding and stabilizing the intestinal lumen with its characteristic brush border. Concepts on the developmental establishment of the endotube in relation to polarization and its function for maintenance of epithelial integrity are discussed. Furthermore, possible connections of the cytoplasmic cytoskeleton to the nuclear lamin IFs and the importance of these links for nuclear positioning are summarized.


Caenorhabditis elegans Proteins/metabolism , Intermediate Filament Proteins/metabolism , Intermediate Filaments/metabolism , Animals , Caenorhabditis elegans , Cytoskeleton/metabolism , Embryo, Nonmammalian/metabolism , Intestinal Mucosa/metabolism , Intestines/cytology , Microscopy, Electron , Microscopy, Fluorescence
15.
Dev Biol ; 327(1): 34-47, 2009 Mar 01.
Article En | MEDLINE | ID: mdl-19109941

The let-413/scribble and dlg-1/discs large genes are key regulators of epithelial cell polarity in C. elegans and other systems but the mechanism how they organize a circumferential junctional belt around the apex of epithelial cells is not well understood. We report here that IP(3)/Ca(2+) signaling is involved in the let-413/dlg-1 pathway for the establishment of epithelial cell polarity during the development in C. elegans. Using RNAi to interfere with let-413 and dlg-1 gene functions during post-embryogenesis, we discovered a requirement for LET-413 and DLG-1 in the polarization of the spermathecal cells. The spermatheca forms an accordion-like organ through which eggs must enter to complete the ovulation process. LET-413- and DLG-1-depleted animals exhibit failure of ovulation. Consistent with this phenotype, the assembly of the apical junction into a continuous belt fails and the PAR-3 protein and microfilaments are no longer localized asymmetrically. All these defects can be suppressed by mutations in IPP-5, an inositol polyphosphate 5-phosphatase and in ITR-1, an inositol triphosphate receptor, which both are supposed to increase the intracellular Ca(2+) level. Analysis of embryogenesis revealed that IP(3)/Ca(2+) signaling is also required during junction assembly in embryonic epithelia.


Caenorhabditis elegans Proteins/physiology , Calcium Signaling , Guanylate Kinases/physiology , Inositol Phosphates/metabolism , Intercellular Junctions/metabolism , Animals , Caenorhabditis elegans/embryology , Caenorhabditis elegans/growth & development , Cell Polarity , Embryonic Development , Epithelial Cells , Epithelium , Female , Male , Ovulation
16.
Dev Biol ; 327(2): 551-65, 2009 Mar 15.
Article En | MEDLINE | ID: mdl-19111532

Starting with SAGE-libraries prepared from C. elegans FAC-sorted embryonic intestine cells (8E-16E cell stage), from total embryos and from purified oocytes, and taking advantage of the NextDB in situ hybridization data base, we define sets of genes highly expressed from the zygotic genome, and expressed either exclusively or preferentially in the embryonic intestine or in the intestine of newly hatched larvae; we had previously defined a similarly expressed set of genes from the adult intestine. We show that an extended TGATAA-like sequence is essentially the only candidate for a cis-acting regulatory motif common to intestine genes expressed at all stages. This sequence is a strong ELT-2 binding site and matches the sequence of GATA-like sites found to be important for the expression of every intestinal gene so far analyzed experimentally. We show that the majority of these three sets of highly expressed intestinal-specific/intestinal-enriched genes respond strongly to ectopic expression of ELT-2 within the embryo. By flow-sorting elt-2(null) larvae from elt-2(+) larvae and then preparing Solexa/Illumina-SAGE libraries, we show that the majority of these genes also respond strongly to loss-of-function of ELT-2. To test the consequences of loss of other transcription factors identified in the embryonic intestine, we develop a strain of worms that is RNAi-sensitive only in the intestine; however, we are unable (with one possible exception) to identify any other transcription factor whose intestinal loss-of-function causes a phenotype of comparable severity to the phenotype caused by loss of ELT-2. Overall, our results support a model in which ELT-2 is the predominant transcription factor in the post-specification C. elegans intestine and participates directly in the transcriptional regulation of the majority (>80%) of intestinal genes. We present evidence that ELT-2 plays a central role in most aspects of C. elegans intestinal physiology: establishing the structure of the enterocyte, regulating enzymes and transporters involved in digestion and nutrition, responding to environmental toxins and pathogenic infections, and regulating the downstream intestinal components of the daf-2/daf-16 pathway influencing aging and longevity.


Caenorhabditis elegans Proteins/metabolism , Caenorhabditis elegans , GATA Transcription Factors/metabolism , Gene Expression Regulation, Developmental , Intestines/physiology , Animals , Base Sequence , Caenorhabditis elegans/anatomy & histology , Caenorhabditis elegans/embryology , Caenorhabditis elegans/growth & development , Caenorhabditis elegans Proteins/genetics , Computational Biology , GATA Transcription Factors/genetics , Intestines/anatomy & histology , Molecular Sequence Data , Phenotype , Promoter Regions, Genetic , RNA Interference , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Signal Transduction/physiology
17.
Differentiation ; 76(8): 881-96, 2008 Oct.
Article En | MEDLINE | ID: mdl-18452552

The Caenorhabditis elegans intestinal lumen is surrounded by a dense cytoplasmic network that is laterally attached to the junctional complex and is referred to as the endotube. It localizes to the terminal web region which anchors the microvillar actin filament bundles and is particularly rich in intermediate filaments. To examine their role in intestinal morphogenesis and function, C. elegans reporter strains were generated expressing intestine-specific CFP-tagged intermediate filament polypeptide IFB-2. When these animals were treated with dsRNA against intestinal intermediate filament polypeptide IFC-2, the endotube developed multiple bubble-shaped invaginations that protruded into the enterocytic cytoplasm. The irregularly widened lumen remained surrounded by a continuous IFB-2::CFP-labeled layer. Comparable but somewhat mitigated phenotypic changes were also noted in wild-type N2 worms treated with ifc-2 (RNAi). Junctional complexes were ultrastructurally and functionally normal and the apical domain of intestinal cells was also not altered. These observations demonstrate that IFC-2 is important for structural maintenance of the intestinal tube but is not needed for establishment of the endotube and epithelial cell polarity.


Caenorhabditis elegans Proteins/physiology , Caenorhabditis elegans/physiology , Intermediate Filament Proteins/physiology , Intestinal Mucosa/metabolism , Intestines/cytology , Animals , Caenorhabditis elegans/cytology , Caenorhabditis elegans Proteins/ultrastructure , Cell Polarity/genetics , Cell Polarity/physiology , Epithelial Cells/cytology , Gene Expression Regulation, Developmental/physiology , Homeostasis/physiology , Intermediate Filament Proteins/biosynthesis , Intermediate Filament Proteins/genetics , Intestines/ultrastructure , Microscopy, Confocal , Microscopy, Electron, Transmission
18.
Curr Biol ; 14(19): R844-6, 2004 Oct 05.
Article En | MEDLINE | ID: mdl-15458664

The formation and maintenance of cilia and flagella require a selective and directed transport along the axoneme, a characteristic central bundle of microtubules. Recent evidence suggests an interesting link between the generation of cilia and the protein complexes that establish apico-basal cell polarity.


Cilia/physiology , Flagella/physiology , Microtubules/physiology , Molecular Motor Proteins/physiology , Morphogenesis/physiology , Cell Polarity/genetics , Cell Polarity/physiology , Intercellular Signaling Peptides and Proteins/genetics , Intercellular Signaling Peptides and Proteins/physiology , Models, Biological , Protein Transport/physiology
19.
Genetics ; 167(2): 645-61, 2004 Jun.
Article En | MEDLINE | ID: mdl-15238518

PGL-1 is a constitutive protein component of C. elegans germ granules, also known as P granules. Maternally supplied PGL-1 is essential for germline development but only at elevated temperature, raising the possibility that redundant factors provide sufficient function at lower temperatures. We have identified two PGL-1-related proteins, PGL-2 and PGL-3, by sequence analysis of the C. elegans genome and by a yeast two-hybrid screen for proteins that interact with PGL-1. PGL-3 is associated with P granules at all stages of development, while PGL-2 is associated with P granules only during postembryonic development. All three PGL proteins interact with each other in vitro. Furthermore, PGL-1 and PGL-3 are co-immunoprecipitated from embryo extracts, indicating that they are indeed in the same protein complex in vivo. Nevertheless, each PGL protein localizes to P granules independently of the other two. pgl-2 or pgl-3 single-mutant worms do not show obvious defects in germline development. However, pgl-1; pgl-3 (but not pgl-2; pgl-1) double-mutant hermaphrodites and males show significantly enhanced sterility at all temperatures, compared to pgl-1 alone. Mutant hermaphrodites show defects in germline proliferation and in production of healthy gametes and viable embryos. Our findings demonstrate that both PGL-2 and PGL-3 are components of P granules, both interact with PGL-1, and at least PGL-3 functions redundantly with PGL-1 to ensure fertility in both sexes of C. elegans.


Caenorhabditis elegans Proteins/genetics , Caenorhabditis elegans/genetics , Germ-Line Mutation , RNA-Binding Proteins/genetics , Amino Acid Sequence , Animals , Base Sequence , Caenorhabditis elegans/growth & development , Caenorhabditis elegans Proteins/chemistry , Cytoplasmic Granules/genetics , Cytoplasmic Granules/physiology , DNA Primers , Female , Fertility , Glutathione Transferase/genetics , Glutathione Transferase/metabolism , In Situ Hybridization , Male , Molecular Sequence Data , Mutagenesis , Polymerase Chain Reaction , Protein Isoforms/chemistry , Protein Isoforms/genetics , RNA-Binding Proteins/chemistry , Recombinant Fusion Proteins/metabolism , Sequence Alignment , Sequence Deletion , Sequence Homology, Amino Acid
20.
Dev Biol ; 272(1): 262-76, 2004 Aug 01.
Article En | MEDLINE | ID: mdl-15242805

Members of the ezrin-radixin-moesin (ERM) family of proteins have been found to serve as linkers between membrane proteins and the F-actin cytoskeleton in many organisms. We used RNA interference (RNAi) approach to assay ERM proteins of the Caenorhabditis elegans genome for a possible involvement in apical junction (AJ) assembly or positioning. We identify erm-1 as the only ERM protein required for development and show, by multiple RNA interference, that additional four-point one, ezrin-radixin-moesin (FERM) domain-containing proteins cannot compensate for the depletion of ERM-1. ERM-1 is expressed in most if not all cells of the embryo at low levels but is upregulated in epithelia, like the intestine. ERM-1 protein co-localizes with F-actin and the intermediate filament protein IFB-2 at the apical cell cortex. ERM-1 depletion results in intestine-specific phenotypes like lumenal constrictions or even obstructions. This phenotype arises after epithelial polarization of intestinal cells and can be monitored using markers of the apical junction. We show that the initial steps of epithelial polarization in the intestine are not affected in erm-1(RNAi) embryos but the positioning of apical junction proteins to an apico-lateral position arrests prematurely or fails, resulting in multiple obstructions of the intestinal flow after hatching. Mechanistically, this phenotype might be due to an altered apical cytoskeleton because the apical enrichment of F-actin filaments is lost specifically in the intestine. ERM-1 is the first protein of the apical membrane domain affecting junction remodelling in C. elegans. ERM-1 interacts genetically with the catenin-cadherin system but not with the DLG-1 (Discs large)-dependent establishment of the apical junction.


Caenorhabditis elegans Proteins/metabolism , Cytoskeletal Proteins/metabolism , Intestines/cytology , Actins/genetics , Actins/metabolism , Actins/ultrastructure , Amino Acid Sequence , Animals , Blood Proteins/genetics , Blood Proteins/metabolism , Caenorhabditis elegans/embryology , Caenorhabditis elegans/growth & development , Caenorhabditis elegans Proteins/genetics , Cytoskeletal Proteins/genetics , Embryo, Nonmammalian , Epithelial Cells/metabolism , Epithelial Cells/pathology , Gene Expression Regulation, Developmental , Intestinal Mucosa/metabolism , Intestines/embryology , Intestines/pathology , Membrane Proteins/genetics , Membrane Proteins/metabolism , Microfilament Proteins/genetics , Microfilament Proteins/metabolism , Molecular Sequence Data , Phosphoproteins/genetics , Phosphoproteins/metabolism
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